As far as I know, the Onboard CAs and issued certificates are restored from a backup. In the (far) past, I remember that I had to import he Onboard CA root in the Trust List manually to get the authentication accepted, but think that is fixed in recent releases.
Also, if you configured OCSP to include the name of the ClearPass server in the client certificate, and you do OCSP checking based on the ocsp-url in the client certificate, and that name changed, you might need to re-provision all your client certificates or do an override of the OCSP url in your Authentication Method to check at localhost (recommended anyway).
With a pretty standard, straightforward implementation, you are likely okay. Good thing is that you will have both servers in parallel and can test before you swap over.